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Crystal structure of Cytochrome C Peroxidase W191G-Gateless in complex with 2,4-diaminopyrimidine
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 283 Apo crystal grown in 500mM MES, pH 6.0. Soaked into 50mM 2,4-diaminopyrimidine, 25% MPD pH 4.5 (30min-1h), temperature 283K
Crystal Properties Matthews coefficient Solvent content 3.11 60.48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.846 α = 90 b = 75.575 β = 90 c = 106.693 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 CCD ADSC QUANTUM 315r 2009-06-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 61.66 72171
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.45 39.23 72171 3644 98.49 0.1163 0.1148 0.131 0.1448 0.1591 RANDOM 20.3654
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.46 0.15 -0.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.107 r_dihedral_angle_4_deg 26.789 r_dihedral_angle_3_deg 13.18 r_dihedral_angle_1_deg 5.978 r_scangle_it 5.778 r_scbond_it 4.299 r_mcangle_it 2.766 r_mcbond_it 1.952 r_rigid_bond_restr 1.84 r_angle_refined_deg 1.741
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.107 r_dihedral_angle_4_deg 26.789 r_dihedral_angle_3_deg 13.18 r_dihedral_angle_1_deg 5.978 r_scangle_it 5.778 r_scbond_it 4.299 r_mcangle_it 2.766 r_mcbond_it 1.952 r_rigid_bond_restr 1.84 r_angle_refined_deg 1.741 r_angle_other_deg 1.051 r_mcbond_other 0.77 r_chiral_restr 0.121 r_bond_refined_d 0.019 r_gen_planes_refined 0.011 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2328 Nucleic Acid Atoms Solvent Atoms 471 Heterogen Atoms 61
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction ADSC data collection DENZO data reduction SCALEPACK data scaling PHASER phasing