☰ Navigation Tabs
Crystal structure of BRCA1 BRCT with doubly phosphorylated Abraxas
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1Y98
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 pH 6.5, VAPOR DIFFUSION, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 4.42 72.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 113.599 α = 90 b = 113.599 β = 90 c = 121.61 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate 2013-02-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER AXS MICROSTAR 1.54179
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.5 25 6221
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1Y98 3.5 22.19 6221 306 100 0.2997 0.2983 0.2952 0.3273 0.3343 RANDOM 49.9077
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.01 -0.01 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.734 r_dihedral_angle_3_deg 24.045 r_dihedral_angle_1_deg 9.856 r_dihedral_angle_4_deg 9.029 r_angle_refined_deg 1.96 r_scangle_it 0.403 r_scbond_it 0.216 r_mcangle_it 0.164 r_chiral_restr 0.14 r_mcbond_it 0.087
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.734 r_dihedral_angle_3_deg 24.045 r_dihedral_angle_1_deg 9.856 r_dihedral_angle_4_deg 9.029 r_angle_refined_deg 1.96 r_scangle_it 0.403 r_scbond_it 0.216 r_mcangle_it 0.164 r_chiral_restr 0.14 r_mcbond_it 0.087 r_bond_refined_d 0.016 r_gen_planes_refined 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1792 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction SCALA data scaling