☰ Navigation Tabs
The conformation of a docking site for SH3 domains is pre-selected in the Guanine Nucleotide Exchange Factor Rlf
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3QXL 3QXL, 2IJE experimental model PDB 2IJE 3QXL, 2IJE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 289 0.1M Bis-Tris propane, 0.2M NaNO3, 12% PEG 3350
, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.58 52.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.93 α = 90 b = 75.62 β = 98.15 c = 101.33 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2011-07-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.97626 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 31 98.6 24.3 4.73 47332 46676
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.4 98.7 3.44 3.94 5592
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3QXL, 2IJE 2.3 30.98 47332 44339 2335 100 0.25337 0.25156 0.249 0.28793 0.282 RANDOM 41.568
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.1 -0.59 -0.63 -0.64
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.736 r_dihedral_angle_3_deg 14.799 r_dihedral_angle_4_deg 13.089 r_dihedral_angle_1_deg 3.954 r_scangle_it 0.959 r_angle_refined_deg 0.887 r_scbond_it 0.524 r_mcangle_it 0.484 r_mcbond_it 0.259 r_chiral_restr 0.053
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.736 r_dihedral_angle_3_deg 14.799 r_dihedral_angle_4_deg 13.089 r_dihedral_angle_1_deg 3.954 r_scangle_it 0.959 r_angle_refined_deg 0.887 r_scbond_it 0.524 r_mcangle_it 0.484 r_mcbond_it 0.259 r_chiral_restr 0.053 r_bond_refined_d 0.006 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6117 Nucleic Acid Atoms Solvent Atoms 182 Heterogen Atoms
Software Software Software Name Purpose MOLREP phasing REFMAC refinement XDS data reduction XSCALE data scaling