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Crystal structure of Glutathione S-transferase A6TBY7(Target EFI-507184) from Klebsiella pneumoniae MGH 78578, GSH complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3BBY PDB ENTRY 3BBY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 3.5M SODIUM PHORMATE, PH 7.0 VAPOR DIFFUSION, SITTING DROP
Crystal Properties Matthews coefficient Solvent content 2.46 50.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.897 α = 90 b = 67.897 β = 90 c = 97.547 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 MIRRORS 2012-02-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 1.075 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.48 50 98.9 0.059 12.9 6.3 43402 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.48 1.51 100 0.601 2.4 6.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3BBY 1.48 37.57 42048 1355 98.88 0.10901 0.10834 0.1136 0.13078 0.135 RANDOM 29.703
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.34 0.34 0.34 -1.1
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 37.824 r_dihedral_angle_2_deg 34.624 r_dihedral_angle_4_deg 18.277 r_sphericity_bonded 16.901 r_dihedral_angle_3_deg 11.097 r_dihedral_angle_1_deg 5.243 r_rigid_bond_restr 4.091 r_angle_refined_deg 1.245 r_angle_other_deg 1.159 r_chiral_restr 0.104
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 37.824 r_dihedral_angle_2_deg 34.624 r_dihedral_angle_4_deg 18.277 r_sphericity_bonded 16.901 r_dihedral_angle_3_deg 11.097 r_dihedral_angle_1_deg 5.243 r_rigid_bond_restr 4.091 r_angle_refined_deg 1.245 r_angle_other_deg 1.159 r_chiral_restr 0.104 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_scbond_it r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1651 Nucleic Acid Atoms Solvent Atoms 297 Heterogen Atoms 24
Software Software Software Name Purpose PHASER phasing REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling