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Crystal structure of the dimerization domain of Hsc70-interacting protein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 291 2.52 Na-malonate, pH 7.0, vapor diffusion, hanging drop, temperature 291K
Crystal Properties Matthews coefficient Solvent content 1.9 35.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 28.775 α = 90 b = 43.978 β = 93.44 c = 32.211 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2009-07-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.90004 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 43.98 98.6 0.057 0.057 13.4 3.6 32315 32315 -1 -1 7.173
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.1 1.16 97.5 0.323 0.323 2 3.5 4640
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 1.1 20 31136 30476 1598 97.88 0.1363 0.1363 0.1349 0.1327 0.1618 0.1576 RANDOM 14.8781
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.07 0.04 0.01 0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.358 r_dihedral_angle_3_deg 12.445 r_dihedral_angle_4_deg 9.067 r_sphericity_free 7.702 r_scangle_it 6.247 r_sphericity_bonded 5.972 r_dihedral_angle_1_deg 4.865 r_scbond_it 4.673 r_mcangle_it 3.134 r_mcbond_it 2.757
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.358 r_dihedral_angle_3_deg 12.445 r_dihedral_angle_4_deg 9.067 r_sphericity_free 7.702 r_scangle_it 6.247 r_sphericity_bonded 5.972 r_dihedral_angle_1_deg 4.865 r_scbond_it 4.673 r_mcangle_it 3.134 r_mcbond_it 2.757 r_rigid_bond_restr 1.995 r_angle_refined_deg 1.722 r_angle_other_deg 0.969 r_mcbond_other 0.838 r_symmetry_vdw_other 0.32 r_nbd_refined 0.266 r_nbd_other 0.219 r_symmetry_hbond_refined 0.217 r_nbtor_refined 0.189 r_xyhbond_nbd_refined 0.189 r_symmetry_vdw_refined 0.179 r_chiral_restr 0.094 r_nbtor_other 0.088 r_bond_refined_d 0.015 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 720 Nucleic Acid Atoms Solvent Atoms 147 Heterogen Atoms 6
Software Software Software Name Purpose SCALA data scaling SHELX phasing SHELX model building REFMAC refinement PDB_EXTRACT data extraction XDS data scaling XSCALE data scaling SHELXD phasing