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Computational Design of an Unnatural Amino Acid Metalloprotein with Atomic Level Accuracy
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 6.5 298 1.6 M ammonium sulfate, 3% PEG3350, pH 6.5, EVAPORATION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.63 53.21
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.573 α = 90 b = 62.79 β = 90 c = 92.709 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 98 IMAGE PLATE RIGAKU RAXIS IV++ Varimax HR 2012-10-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 51.99 97.6 0.083 9.6 3.4 11274 10998 2 37.86
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.59 95.8 0.39 3.3 1037
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.5 51.99 10396 10396 526 96.91 0.2031 0.2031 0.20035 0.1956 0.25699 0.2507 RANDOM 33.488
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.05 0.26 -0.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.069 r_dihedral_angle_3_deg 21.206 r_dihedral_angle_4_deg 20.345 r_dihedral_angle_1_deg 7.523 r_scangle_it 5.534 r_scbond_it 3.302 r_mcangle_it 2.083 r_angle_refined_deg 2.081 r_mcbond_it 1.066 r_chiral_restr 0.132
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.069 r_dihedral_angle_3_deg 21.206 r_dihedral_angle_4_deg 20.345 r_dihedral_angle_1_deg 7.523 r_scangle_it 5.534 r_scbond_it 3.302 r_mcangle_it 2.083 r_angle_refined_deg 2.081 r_mcbond_it 1.066 r_chiral_restr 0.132 r_bond_refined_d 0.024 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1988 Nucleic Acid Atoms Solvent Atoms 39 Heterogen Atoms 11
Software Software Software Name Purpose CrystalClear data collection PHASER phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling