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Crystal Structure of FUS-1 (OXA-85), a Class D beta-lactamase from Fusobacterium nucleatum subsp. polymorphum
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 293 FUS-1 15mg/mL in 10 mM Tris pH=8.0, 0.1M NaCl, 4.0 M Na/NH4 formate, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.07 40.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.945 α = 84.59 b = 65.67 β = 82.91 c = 91.698 γ = 70.12
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2005-11-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.934 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 37.59 95.5 0.062 17.7 3.3 146121 146121 2 11.448
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.58 94 0.246 6.1 3.3 21066
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.5 37.59 132805 13309 95.48 0.14961 0.14615 0.1548 0.18428 0.1896 RANDOM 12.78
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 -0.02 0.03 -0.01 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.407 r_dihedral_angle_4_deg 19.08 r_dihedral_angle_3_deg 13.238 r_dihedral_angle_1_deg 5.969 r_angle_refined_deg 2.131 r_angle_other_deg 0.982 r_chiral_restr 0.151 r_bond_refined_d 0.022 r_gen_planes_refined 0.012 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.407 r_dihedral_angle_4_deg 19.08 r_dihedral_angle_3_deg 13.238 r_dihedral_angle_1_deg 5.969 r_angle_refined_deg 2.131 r_angle_other_deg 0.982 r_chiral_restr 0.151 r_bond_refined_d 0.022 r_gen_planes_refined 0.012 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8081 Nucleic Acid Atoms Solvent Atoms 1689 Heterogen Atoms 26
Software Software Software Name Purpose PXSOFT data collection MOLREP phasing REFMAC refinement MOSFLM data reduction SCALA data scaling