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Substrate and reaction specificity of Mycobacterium tuberculosis cytochrome P450 CYP121
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 277 Ammonium sulfate, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.68 54.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.808 α = 90 b = 77.808 β = 90 c = 264.085 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 130 mm 2010-07-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID13 0.8726 ESRF ID13
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 67.42 99.8 0.152 6.6 44879 1 1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.8 31.46 42581 2260 99.63 0.18016 0.17763 0.22846 0.239 RANDOM 24.924
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.17 0.08 0.17 -0.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.664 r_dihedral_angle_4_deg 14.642 r_dihedral_angle_3_deg 12.92 r_dihedral_angle_1_deg 5.068 r_rigid_bond_restr 3.376 r_scbond_it 3.139 r_scangle_it 2.993 r_sphericity_free 2.754 r_sphericity_bonded 2.021 r_angle_refined_deg 1.196
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.664 r_dihedral_angle_4_deg 14.642 r_dihedral_angle_3_deg 12.92 r_dihedral_angle_1_deg 5.068 r_rigid_bond_restr 3.376 r_scbond_it 3.139 r_scangle_it 2.993 r_sphericity_free 2.754 r_sphericity_bonded 2.021 r_angle_refined_deg 1.196 r_mcangle_it 1.055 r_mcbond_it 0.701 r_nbtor_refined 0.301 r_nbd_refined 0.196 r_symmetry_vdw_refined 0.141 r_symmetry_hbond_refined 0.14 r_xyhbond_nbd_refined 0.13 r_chiral_restr 0.08 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3031 Nucleic Acid Atoms Solvent Atoms 588 Heterogen Atoms 86
Software Software Software Name Purpose ADSC data collection FFT model building REFMAC refinement MOSFLM data reduction SCALA data scaling FFT phasing