4IC1

Crystal structure of SSO0001


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.629525% PEG 3350, 0.1M NaCitrate, 0.2M NaCl, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties
Matthews coefficientSolvent content
3.1360.69

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 86.152α = 90
b = 197.761β = 100.88
c = 89.41γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315rmirrors2012-10-30MSINGLE WAVELENGTH
21x-ray100CCDADSC QUANTUM 210mirrors2012-10-30MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.9794APS19-ID
2SYNCHROTRONAPS BEAMLINE 19-BM1.738APS19-BM

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.354097.30.04525.63.71217081189721.7249
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.352.3994.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Cut-off Sigma (I)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.354021.710063395585503882.330.220.205330.201280.2487RANDOM27.708
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.370.3-0.16
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.563
r_dihedral_angle_4_deg19.791
r_dihedral_angle_3_deg17.005
r_scangle_it6.285
r_dihedral_angle_1_deg6.112
r_scbond_it3.951
r_mcangle_it3.029
r_mcbond_other2.586
r_rigid_bond_restr2.276
r_angle_refined_deg2.092
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.563
r_dihedral_angle_4_deg19.791
r_dihedral_angle_3_deg17.005
r_scangle_it6.285
r_dihedral_angle_1_deg6.112
r_scbond_it3.951
r_mcangle_it3.029
r_mcbond_other2.586
r_rigid_bond_restr2.276
r_angle_refined_deg2.092
r_mcbond_it1.718
r_angle_other_deg1.315
r_chiral_restr0.17
r_bond_refined_d0.022
r_gen_planes_refined0.007
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms16077
Nucleic Acid Atoms
Solvent Atoms292
Heterogen Atoms90

Software

Software
Software NamePurpose
SBC-Collectdata collection
Auto-Rickshawphasing
REFMACrefinement
HKL-3000data reduction
HKL-3000data scaling