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Crystal structure of the Trypanosoma brucei Inosine-Adenosine-Guanosine nucleoside hydrolase in complex with compound UAMC-00312
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.3 292 0.1M Tris, 19% PEGMME2000, 10mM Ni2SO4, pH 7.3, Vapor diffusion, temperature 292K
Crystal Properties Matthews coefficient Solvent content 2.06 40.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.17 α = 90 b = 131.67 β = 91.33 c = 71.85 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2010-11-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.933 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.18 72 99.7 0.138 9.06 3.8 61007 61007 -3 30.264
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.18 2.24 97.5 0.671 0.786 1.96 3.7 4374
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.18 71.83 61007 61007 3089 99.72 0.2025 0.2001 0.2035 0.2477 0.251 RANDOM 23.4422
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 0.76 -0.55 0.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.157 r_dihedral_angle_3_deg 14.147 r_dihedral_angle_4_deg 9.788 r_dihedral_angle_1_deg 6.392 r_scangle_it 3.203 r_scbond_it 1.991 r_angle_refined_deg 1.559 r_mcangle_it 1.295 r_angle_other_deg 1.032 r_mcbond_it 0.684
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.157 r_dihedral_angle_3_deg 14.147 r_dihedral_angle_4_deg 9.788 r_dihedral_angle_1_deg 6.392 r_scangle_it 3.203 r_scbond_it 1.991 r_angle_refined_deg 1.559 r_mcangle_it 1.295 r_angle_other_deg 1.032 r_mcbond_it 0.684 r_mcbond_other 0.185 r_chiral_restr 0.089 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_gen_planes_other 0.004 r_bond_other_d 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9941 Nucleic Acid Atoms Solvent Atoms 670 Heterogen Atoms 101
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction DNA data collection XDS data reduction MOLREP phasing