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The structure of Cysteine synthase from Mycobacterium ulcerans Agy99
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3RR2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 298 27.42 mg/ml MyulA.01147.b, 20% PEG3350, 200mM sodium sulfate, bis-tris propane pH 6.5, 20% ethylene glycol, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.66 53.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.965 α = 114.21 b = 77.9 β = 104.86 c = 87.101 γ = 94.37
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2010-12-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.1 0.97 ALS 5.0.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 50 97.9 0.052 12.5 3.5 40349
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.64 89.3 0.432 3.3 1803
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3RR2 2.6 48.71 40348 2029 97.54 0.2626 0.2611 0.2556 0.2935 0.2929 RANDOM 82.3106
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.28 1.2 1.04 -3.55 1.66 2.68
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.103 r_dihedral_angle_4_deg 18.449 r_dihedral_angle_3_deg 16.78 r_dihedral_angle_1_deg 6.739 r_angle_refined_deg 1.282 r_angle_other_deg 1.2 r_chiral_restr 0.063 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.103 r_dihedral_angle_4_deg 18.449 r_dihedral_angle_3_deg 16.78 r_dihedral_angle_1_deg 6.739 r_angle_refined_deg 1.282 r_angle_other_deg 1.2 r_chiral_restr 0.063 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7445 Nucleic Acid Atoms Solvent Atoms 44 Heterogen Atoms 13
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction HKL-2000 data scaling