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Crystal structure of glutathione s-transferase b4xh91 (target efi-501787) from actinobacillus pleuropneumoniae
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3UAP PDB ENTRY 3UAP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.2 0.1M SODIUM HYDROGEN PHOSPHATE:CITRIC ACID, PH 4.2, 1.6M SODIUM DIHYDROGEN PHOSPHATE, 0.4M POTASSIUM HYDROGEN PHOSPHATE , VAPOR DIFFUSION, SITTING DROP
Crystal Properties Matthews coefficient Solvent content 2.27 45.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.406 α = 90 b = 54.406 β = 90 c = 150.757 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 MIRRORS 2012-10-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.62 50 99.9 0.063 12.9 25.4 29710 -5 23.157
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.62 1.65 100 0.36 9 25.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3UAP 1.62 50 28713 952 99.85 0.14114 0.13973 0.1455 0.18719 0.1907 RANDOM 29.071
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.12 0.12 -0.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.791 r_dihedral_angle_3_deg 13.642 r_dihedral_angle_4_deg 12.756 r_scangle_it 10.75 r_scbond_it 7.833 r_mcangle_it 6.407 r_dihedral_angle_1_deg 4.975 r_rigid_bond_restr 4.579 r_mcbond_it 4.53 r_angle_refined_deg 1.203
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.791 r_dihedral_angle_3_deg 13.642 r_dihedral_angle_4_deg 12.756 r_scangle_it 10.75 r_scbond_it 7.833 r_mcangle_it 6.407 r_dihedral_angle_1_deg 4.975 r_rigid_bond_restr 4.579 r_mcbond_it 4.53 r_angle_refined_deg 1.203 r_chiral_restr 0.072 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1715 Nucleic Acid Atoms Solvent Atoms 187 Heterogen Atoms 6
Software Software Software Name Purpose PHASER phasing REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling