☰ Navigation Tabs
Crystal structure of glutathione s-transferase xaut_3756 (target efi-507152) from xanthobacter autotrophicus py2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3M3M PDB ENTRY 3M3M
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 0.2M MAGNESIUM CHLORIDE, 1.2M SODIUM CITRATE TRIBASIC , pH 8.5
Crystal Properties Matthews coefficient Solvent content 2.75 55.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.886 α = 90 b = 132.694 β = 90 c = 43.229 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 MIRRORS 2012-10-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.48 50 96.5 0.07 6.8 3.9 93903 -5 22.88
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.48 1.51 94.2 0.93 1 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3M3M 1.5 39.51 84462 2627 96.56 0.13989 0.13814 0.1413 0.1994 0.2034 RANDOM 26.723
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.47 2.68 -1.21
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 34.922 r_dihedral_angle_2_deg 27.585 r_sphericity_bonded 24.757 r_rigid_bond_restr 24.382 r_dihedral_angle_4_deg 21.716 r_dihedral_angle_3_deg 11.109 r_dihedral_angle_1_deg 4.809 r_angle_refined_deg 1.269 r_chiral_restr 0.084 r_bond_refined_d 0.01
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 34.922 r_dihedral_angle_2_deg 27.585 r_sphericity_bonded 24.757 r_rigid_bond_restr 24.382 r_dihedral_angle_4_deg 21.716 r_dihedral_angle_3_deg 11.109 r_dihedral_angle_1_deg 4.809 r_angle_refined_deg 1.269 r_chiral_restr 0.084 r_bond_refined_d 0.01 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_scbond_it r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3191 Nucleic Acid Atoms Solvent Atoms 493 Heterogen Atoms 54
Software Software Software Name Purpose PHASER phasing REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling