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Dihydrodipicolinate Synthase from the common grapevine with pyruvate and lysine
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 0.1M MES pH 6.5, 6% (v/v) PEG 20,000, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.19 61.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 220.61 α = 90 b = 137.93 β = 108.25 c = 133.94 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.9536 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 127.2 98.5 362734 146233 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.4 127.2 362734 144163 1995 98.4 0.18175 0.18127 0.1824 0.21621 0.2137 RANDOM 24.385
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.24 0.06 1.94 -0.65
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.991 r_dihedral_angle_4_deg 19.472 r_dihedral_angle_3_deg 17.71 r_dihedral_angle_1_deg 5.564 r_scangle_it 2.084 r_angle_refined_deg 1.198 r_scbond_it 1.186 r_mcangle_it 0.735 r_mcbond_it 0.368 r_chiral_restr 0.083
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.991 r_dihedral_angle_4_deg 19.472 r_dihedral_angle_3_deg 17.71 r_dihedral_angle_1_deg 5.564 r_scangle_it 2.084 r_angle_refined_deg 1.198 r_scbond_it 1.186 r_mcangle_it 0.735 r_mcbond_it 0.368 r_chiral_restr 0.083 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 18989 Nucleic Acid Atoms Solvent Atoms 973 Heterogen Atoms 80
Software Software Software Name Purpose Blu-Ice data collection PHASES phasing REFMAC refinement MOSFLM data reduction SCALA data scaling