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Structure of the CcbJ Methyltransferase from Streptomyces caelestis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 291 0.1 M Na HEPES pH 7.5, 1.3 M Li2SO4.H2O, 10% ethylene glycol, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 3.34 63.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 168.18 α = 90 b = 245.14 β = 90 c = 117.83 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r Pd coated toroidal mirror (Seso, France) 2009-06-22 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.97936, 0.97944, 0.97549 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 62.4 100 0.076 25.9 14.6 49290 49290 2 62.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.16 100 0.378 7.5 14.9 7117
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 3 62.36 49069 46589 2480 99.94 0.22633 0.22633 0.22518 0.2168 0.24791 0.2379 RANDOM 62.292
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.59 1.52 -0.93
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.475 r_dihedral_angle_4_deg 15 r_dihedral_angle_3_deg 13.807 r_dihedral_angle_1_deg 4.492 r_scangle_it 3.613 r_scbond_it 2.071 r_mcangle_it 1.464 r_mcbond_it 0.748 r_angle_refined_deg 0.747 r_chiral_restr 0.051
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.475 r_dihedral_angle_4_deg 15 r_dihedral_angle_3_deg 13.807 r_dihedral_angle_1_deg 4.492 r_scangle_it 3.613 r_scbond_it 2.071 r_mcangle_it 1.464 r_mcbond_it 0.748 r_angle_refined_deg 0.747 r_chiral_restr 0.051 r_bond_refined_d 0.004 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10753 Nucleic Acid Atoms Solvent Atoms 92 Heterogen Atoms 71
Software Software Software Name Purpose ADSC data collection BP3 model building REFMAC refinement MOSFLM data reduction SCALA data scaling BP3 phasing