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Crystal Structure of E. coli DNA Adenine Methyltransferase in Complex with Indole Aza-SAM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 100 mM MES, 1600 mM ammonium Sulfate, 14-18% glycerol, pH 7.0, Vapor diffusion, hanging drop, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.71 66.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 161.315 α = 90 b = 161.315 β = 90 c = 95.134 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2010-08-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.924530 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.712 35.897 99.7 0.066 21 6.2 38865 38865
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.71 2.78 99.9 0.733 0.733 1 6.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.72 30.04 36479 1934 99.74 0.21249 0.21011 0.203 0.25777 0.2503 RANDOM 55.199
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.01 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.214 r_dihedral_angle_4_deg 20.172 r_dihedral_angle_3_deg 19.58 r_dihedral_angle_1_deg 7.415 r_scangle_it 4.715 r_scbond_it 2.835 r_mcangle_it 2.243 r_angle_refined_deg 1.931 r_mcbond_it 1.183 r_chiral_restr 0.133
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.214 r_dihedral_angle_4_deg 20.172 r_dihedral_angle_3_deg 19.58 r_dihedral_angle_1_deg 7.415 r_scangle_it 4.715 r_scbond_it 2.835 r_mcangle_it 2.243 r_angle_refined_deg 1.931 r_mcbond_it 1.183 r_chiral_restr 0.133 r_bond_refined_d 0.021 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6039 Nucleic Acid Atoms Solvent Atoms 30 Heterogen Atoms 111
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction