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Crystal Structure of AMP complexes of Porcine Liver Fructose-1,6-bisphosphatase Mutant A54L with 1,2-ethanediol as Cryo-protectant
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 hanging drop 7.5 298 PEG 3350, t-butyl alcohol, 1,2-ethanediol, pH 7.5, hanging drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.52 51.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.69 α = 90 b = 82.506 β = 90 c = 166.284 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE Cu FINE FOCUS 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 32.1 93.7 0.122 6.6 2.96 8549 8010 5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.9 3 96.8 0.295 3 2.89 815
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.9 32.1 8549 8005 370 93.65 0.1803 0.1803 0.177 0.1793 0.2427 0.2395 RANDOM 34.9295
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.16 -0.01 0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.198 r_dihedral_angle_4_deg 19.767 r_dihedral_angle_3_deg 18.737 r_dihedral_angle_1_deg 6.006 r_scangle_it 2.276 r_angle_refined_deg 1.545 r_scbond_it 1.414 r_mcangle_it 1.167 r_mcbond_it 0.621 r_chiral_restr 0.088
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.198 r_dihedral_angle_4_deg 19.767 r_dihedral_angle_3_deg 18.737 r_dihedral_angle_1_deg 6.006 r_scangle_it 2.276 r_angle_refined_deg 1.545 r_scbond_it 1.414 r_mcangle_it 1.167 r_mcbond_it 0.621 r_chiral_restr 0.088 r_bond_refined_d 0.012 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2492 Nucleic Acid Atoms Solvent Atoms 103 Heterogen Atoms 46
Software Software Software Name Purpose d*TREK data scaling d*TREK data reduction MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction CrystalClear data collection