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Re-refinement of alpha V beta 3 structure
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 4.8 298 12% PEG3350, 0.1M Na acetate, 0.8M NaCl, 2.5mM CaCl2, pH 4.8, EVAPORATION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 4.08 69.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 129.87 α = 90 b = 129.87 β = 90 c = 305.9 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2009-02-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 1.0332 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 65 93 333510 66702 1 1
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT 2.9 65 1.33 67145 62216 2924 92.66 0.1816 0.1791 0.1863 0.2329 0.2413
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -7.0391 -7.0391 14.0782
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 20.238 f_angle_d 0.734 f_chiral_restr 0.049 f_bond_d 0.005 f_plane_restr 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12518 Nucleic Acid Atoms Solvent Atoms 106 Heterogen Atoms 499
Software Software Software Name Purpose PHENIX refinement CNS refinement HKL-2000 data collection DENZO data reduction HKL-2000 data scaling CNS phasing