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Crystal Structure of Mtb ThyA in Complex with 5-Fluoro-dUMP and 5-methyltetrahydrofolic acid
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3QJ7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.4 298 2M ammonium sulfate, 0.1M imidazole pH 6.4, 5mM spermine, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.96 58.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 184.328 α = 90 b = 82.317 β = 132.3 c = 125.98 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 IMAGE PLATE RIGAKU RAXIS IV++ OSMIC MIRRORS 2009-09-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 48.65 98 0.097 0.097 8.9 5.16 53664 44.17
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.49 96.7 0.446 2.9 5.16
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT 3QJ7 2.4 42.94 53498 53498 2712 97.8 0.214 0.211 0.26 0.2522 42.32
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -6.639 -1.6528 -0.6105 7.2496
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 16.642 f_angle_d 1.148 f_chiral_restr 0.075 f_bond_d 0.008 f_plane_restr 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8272 Nucleic Acid Atoms Solvent Atoms 298 Heterogen Atoms 183
Software Software Software Name Purpose d*TREK data scaling d*TREK data reduction PHASER phasing PHENIX refinement PDB_EXTRACT data extraction