X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.5293100 mM sodium cacodylate pH 6.5, 250 mM ammonium sulfate, 18% (w/v) PEG 8000, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
3.6266.05

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 97.56α = 90
b = 97.56β = 90
c = 423.74γ = 90
Symmetry
Space GroupP 41 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELPSI PILATUS 6M2012-02-13MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SA0.9794SLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.25099.90.1381714.43506935044
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.23.499.90.456.4814.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT3.249.33350443328917531000.2260.223970.26309RANDOM72.577
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.49-0.490.98
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.904
r_dihedral_angle_4_deg18.271
r_dihedral_angle_3_deg17.124
r_dihedral_angle_1_deg5.158
r_scangle_it0.988
r_angle_refined_deg0.97
r_scbond_it0.636
r_mcangle_it0.332
r_nbtor_refined0.296
r_mcbond_it0.243
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.904
r_dihedral_angle_4_deg18.271
r_dihedral_angle_3_deg17.124
r_dihedral_angle_1_deg5.158
r_scangle_it0.988
r_angle_refined_deg0.97
r_scbond_it0.636
r_mcangle_it0.332
r_nbtor_refined0.296
r_mcbond_it0.243
r_symmetry_hbond_refined0.208
r_nbd_refined0.182
r_symmetry_vdw_refined0.16
r_xyhbond_nbd_refined0.13
r_chiral_restr0.064
r_bond_refined_d0.006
r_gen_planes_refined0.002
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8893
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms

Software

Software
Software NamePurpose
SHELXDphasing
SHELXEmodel building
REFMACrefinement
XDSdata reduction
XDSdata scaling