☰ Navigation Tabs
Crystal structure of the E493V mutant of human apoptosis inducing factor (AIF)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1M6I
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 microbatch under oil 8.5 298 30% PEG 1500, 0.1 M TrisHCl pH 8.5, 4% acetone, microbatch under oil, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.56 52.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 102.4 α = 90 b = 62.7 β = 118.57 c = 101.922 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 103 IMAGE PLATE MAR scanner 345 mm plate mirrors 2011-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL7-1 1.0 SSRL BL7-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 39.5 94.2 0.45 11.3 6.8 21475 20005 84.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.462 88.7 0.53 3.1 6.8 3224
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1M6I 2.4 39.5 21475 20005 1082 94.18 0.25548 0.2532 0.2563 0.29678 0.2885 RANDOM 130.215
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.56 -0.08 0.5 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.723 r_dihedral_angle_3_deg 17.126 r_dihedral_angle_4_deg 15.941 r_dihedral_angle_1_deg 5.858 r_angle_refined_deg 1.185 r_chiral_restr 0.082 r_bond_refined_d 0.007 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3555 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 53
Software Software Software Name Purpose Blu-Ice data collection PHASER phasing REFMAC refinement MOSFLM data reduction SCALA data scaling