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Crystal structure of apo-formed ymtOAR1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 6 285 3.0 M sodium chloride, 0.1 M sodium acetate, 0.1 M Bis-Tris, pH 6.0, EVAPORATION, temperature 285K
Crystal Properties Matthews coefficient Solvent content 2.98 58.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 170.832 α = 90 b = 170.832 β = 90 c = 316.222 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX225HE 2010-07-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 0.9793 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 48.2 13.1 67051
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.6 48.2 64496 3577 98.4 0.2309 0.22858 0.2246 0.27404 0.2658 RANDOM 40.27
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.18 0.18 -0.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.43 r_dihedral_angle_3_deg 19.648 r_dihedral_angle_4_deg 17.771 r_dihedral_angle_1_deg 5.87 r_scangle_it 2.509 r_scbond_it 1.481 r_angle_refined_deg 1.303 r_mcangle_it 1.146 r_mcbond_it 0.602 r_chiral_restr 0.094
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.43 r_dihedral_angle_3_deg 19.648 r_dihedral_angle_4_deg 17.771 r_dihedral_angle_1_deg 5.87 r_scangle_it 2.509 r_scbond_it 1.481 r_angle_refined_deg 1.303 r_mcangle_it 1.146 r_mcbond_it 0.602 r_chiral_restr 0.094 r_bond_refined_d 0.01 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11264 Nucleic Acid Atoms Solvent Atoms 64 Heterogen Atoms
Software Software Software Name Purpose HKL-2000 data collection SOLVE phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling