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Human Artd8 (Parp14, Bal2) - catalytic domain in complex with A16(E)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4F1L PDB ENTRY 4F1L
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.8 293 19% PEG 3350, 0.19M NaNO3, 0.1M Bis-tris, pH 5.8, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.82 56.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.676 α = 90 b = 144.986 β = 90 c = 83.333 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-225 mirrors 2012-03-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.91841 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 35 99.7 0.214 12.1 10.9 12656 12656
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.87 99.6 0.881 3.6 11.1 941
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4F1L 2.8 33.24 11410 11410 1268 100 0.22368 0.2171 0.2144 0.28256 0.2759 RANDOM 27.68
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.33 -3.27 -0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.212 r_dihedral_angle_3_deg 15.609 r_dihedral_angle_4_deg 12.903 r_dihedral_angle_1_deg 6.487 r_scangle_it 2.375 r_scbond_it 1.336 r_mcangle_it 1.321 r_angle_refined_deg 1.262 r_angle_other_deg 0.877 r_mcbond_it 0.706
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.212 r_dihedral_angle_3_deg 15.609 r_dihedral_angle_4_deg 12.903 r_dihedral_angle_1_deg 6.487 r_scangle_it 2.375 r_scbond_it 1.336 r_mcangle_it 1.321 r_angle_refined_deg 1.262 r_angle_other_deg 0.877 r_mcbond_it 0.706 r_chiral_restr 0.073 r_mcbond_other 0.072 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2921 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 38
Software Software Software Name Purpose MxCuBE data collection MOLREP phasing REFMAC refinement XDS data reduction XSCALE data scaling