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Crystal structure of the MG2+ free VWA domain of plasmodium falciparum trap protein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 293 25% PEG 3350, 0.1M HEPES, 0.2M lithium sulfate, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 293.0K
Crystal Properties Matthews coefficient Solvent content 2.29 46.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.434 α = 90 b = 89.434 β = 90 c = 104.232 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD THE OPTICAL ELEMENTS CONSIST OF A VERTICALLY COLLIMATING MIRROR (M1, FOCUS AT INFINITY) FOLLOWED BY A BARTELS MONOCHROMATOR WITH DUAL CHANNEL CUT CRYSTALS (DCCM) IN (+--+) GEOMETRY, AND A TOROIDAL MIRROR (M2) TO VERTICALLY AND HORIZONTALLY FOCUS THE BEAM AT THE SAMPLE POSITION (WITH 2:1 HORIZONTAL DEMAGNIFICATION) 2010-05-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 1.0 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.87 50 99.6 0.1 11.49 4.28 66642 -3 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.87 1.99 98 0.645 2.24 4.18 10559
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 1.87 30 35374 33607 1767 100 0.19013 0.19013 0.18769 0.23663 0.2002 RANDOM 13.7
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.08 -0.08 0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.705 r_dihedral_angle_3_deg 12.114 r_dihedral_angle_4_deg 9.183 r_dihedral_angle_1_deg 6.428 r_scangle_it 3.522 r_scbond_it 2.376 r_angle_refined_deg 1.601 r_mcangle_it 1.389 r_angle_other_deg 1.041 r_mcbond_it 1.018
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.705 r_dihedral_angle_3_deg 12.114 r_dihedral_angle_4_deg 9.183 r_dihedral_angle_1_deg 6.428 r_scangle_it 3.522 r_scbond_it 2.376 r_angle_refined_deg 1.601 r_mcangle_it 1.389 r_angle_other_deg 1.041 r_mcbond_it 1.018 r_mcbond_other 0.272 r_symmetry_vdw_other 0.26 r_nbd_refined 0.203 r_nbd_other 0.199 r_nbtor_refined 0.171 r_symmetry_hbond_refined 0.166 r_xyhbond_nbd_refined 0.162 r_symmetry_vdw_refined 0.113 r_chiral_restr 0.107 r_nbtor_other 0.086 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3074 Nucleic Acid Atoms Solvent Atoms 281 Heterogen Atoms 84
Software Software Software Name Purpose MAR345dtb data collection SHARP phasing REFMAC refinement XDS data reduction XDS data scaling