☰ Navigation Tabs
Crystal Structure of PelD 158-CT from Pseudomonas aeruginosa PAO1, in complex with c-di-GMP, form 1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 hanging drop 6.5 298 50 mM sodium cacodylate, pH 6.5, 10 mM MgSO4, 1.3 M Li2SO4, hanging drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.23 44.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.531 α = 90 b = 41.516 β = 110.95 c = 64.402 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray IMAGE PLATE MAR scanner 300 mm plate M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-F 1.0 APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 99.1 0.09 8.2 6.8 19997
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.03 95.1 0.402 5.3 951
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 25 19948 1022 98.98 0.2236 0.2205 0.2406 0.2812 0.2975 RANDOM 45.95
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.47 -2.22 0.15 -0.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.741 r_dihedral_angle_3_deg 18.307 r_dihedral_angle_4_deg 14.269 r_dihedral_angle_1_deg 6.116 r_scangle_it 3.132 r_scbond_it 2.013 r_angle_refined_deg 1.517 r_mcangle_it 1.28 r_mcbond_it 0.693 r_chiral_restr 0.092
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.741 r_dihedral_angle_3_deg 18.307 r_dihedral_angle_4_deg 14.269 r_dihedral_angle_1_deg 6.116 r_scangle_it 3.132 r_scbond_it 2.013 r_angle_refined_deg 1.517 r_mcangle_it 1.28 r_mcbond_it 0.693 r_chiral_restr 0.092 r_bond_refined_d 0.013 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2256 Nucleic Acid Atoms Solvent Atoms 128 Heterogen Atoms 46
Software Software Software Name Purpose SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction