X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.529320% PEG 550 MME, 10% PEG 20000, 0.1M MES/imidazole, 0.02M 1,6-hexanediol, 0.02M 1-butanol, 0.02M (R,S)-1,2-propandiol, 0.02M 2-propanol, 0.02M 1,3-propandiol, 0.02M 1,4-butandiol , pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.957.63

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 106.8α = 90
b = 106.8β = 90
c = 106.8γ = 90
Symmetry
Space GroupP 21 3

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCD2011-02-19MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06DA1.0000SLSX06DA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.9547.7699.90.05123.313.42984129820-3-340.6
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.95299.40.4133.911.22189

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSIRASTHROUGHOUT1.9547.76298172832714901000.173420.173420.172190.19683RANDOM31.135
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.467
r_dihedral_angle_4_deg15.046
r_dihedral_angle_3_deg14.43
r_scangle_it7.487
r_scbond_it5.059
r_dihedral_angle_1_deg4.934
r_mcangle_it3.368
r_mcbond_it2.212
r_angle_refined_deg1.248
r_mcbond_other1.099
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.467
r_dihedral_angle_4_deg15.046
r_dihedral_angle_3_deg14.43
r_scangle_it7.487
r_scbond_it5.059
r_dihedral_angle_1_deg4.934
r_mcangle_it3.368
r_mcbond_it2.212
r_angle_refined_deg1.248
r_mcbond_other1.099
r_angle_other_deg0.879
r_chiral_restr0.074
r_bond_refined_d0.013
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2221
Nucleic Acid Atoms
Solvent Atoms182
Heterogen Atoms5

Software

Software
Software NamePurpose
RemDAqdata collection
autoSHARPphasing
REFMACrefinement
XDSdata reduction
XSCALEdata scaling