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Crystal Structure of PelD 158-CT from Pseudomonas aeruginosa PAO1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 hanging drop 8.5 298 100 mM Tris, pH 8.5, 200 mM Li2SO4, and 1.26 M (NH4)2SO4, hanging drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.4 48.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.32 α = 90 b = 41.31 β = 95.45 c = 110.85 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray IMAGE PLATE MAR scanner 300 mm plate M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-F 1.0 APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 99.7 0.06 15.68 40304 -3 49.001
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.05 2.15 99.8 0.897 2.31
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.05 25 40287 2015 100 0.2328 0.2305 0.24 0.2774 0.2889 RANDOM 53.403
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.43 0.11 -0.74 3.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.673 r_dihedral_angle_3_deg 19.294 r_dihedral_angle_4_deg 17.493 r_dihedral_angle_1_deg 6.333 r_scangle_it 3.25 r_scbond_it 1.991 r_angle_refined_deg 1.51 r_mcangle_it 1.444 r_mcbond_it 0.776 r_chiral_restr 0.101
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.673 r_dihedral_angle_3_deg 19.294 r_dihedral_angle_4_deg 17.493 r_dihedral_angle_1_deg 6.333 r_scangle_it 3.25 r_scbond_it 1.991 r_angle_refined_deg 1.51 r_mcangle_it 1.444 r_mcbond_it 0.776 r_chiral_restr 0.101 r_bond_refined_d 0.013 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4536 Nucleic Acid Atoms Solvent Atoms 140 Heterogen Atoms 92
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction