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C-terminal motor and motor homology domain of Kar3Vik1 fused to a synthetic heterodimeric coiled coil
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3KAR pdb entry 3KAR and 2O0A experimental model PDB 2O0A pdb entry 3KAR and 2O0A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 7.5 277 16% monomethyl polyethylene glycol 2000, 100 mM Hepes, 50 mM sodium citrate, Batch, pH 7.5, EVAPORATION, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.86 57.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.06 α = 90 b = 94.939 β = 90 c = 114.59 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2010-12-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.979206 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 25 99.9 0.051 0.069 19.7 8.6 43354 43179 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.34 99.8 0.601 0.593 3.2 6.2 2701
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 3KAR and 2O0A 2.3 24.97 42866 42866 2156 98.96 0.20923 0.20923 0.20731 0.2078 0.24472 0.2464 RANDOM 69.055
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.16 0.4 -1.56
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.498 r_dihedral_angle_4_deg 16.428 r_dihedral_angle_3_deg 13.006 r_dihedral_angle_1_deg 4.511 r_angle_refined_deg 0.891 r_chiral_restr 0.056 r_bond_refined_d 0.005 r_gen_planes_refined 0.002 r_angle_other_deg r_gen_planes_other
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.498 r_dihedral_angle_4_deg 16.428 r_dihedral_angle_3_deg 13.006 r_dihedral_angle_1_deg 4.511 r_angle_refined_deg 0.891 r_chiral_restr 0.056 r_bond_refined_d 0.005 r_gen_planes_refined 0.002 r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_scbond_it r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5344 Nucleic Acid Atoms Solvent Atoms 246 Heterogen Atoms 74
Software Software Software Name Purpose HKL-2000 data collection PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling