☰ Navigation Tabs
CRYSTAL STRUCTURE OF RAT CARNITINE PALMITOYLTRANSFERASE 2 IN COMPLEX with CoA-site inhibitor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2DEB PDB ENTRY 2DEB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293 Hampton Index #69
0.2 M Ammonium sulfate, 0.1 M Tris 8.5, 25 % (w/v)polyethylene glycol 3,350, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.4 48.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.64 α = 90 b = 67.64 β = 90 c = 309.37 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 CCD MARRESEARCH 2005-12-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.979650 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.28 47.31 98.8 33839 9.31
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.28 2.41 92.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2DEB 2.3 47.31 31450 1670 99.69 0.18888 0.18573 0.2491 0.251 RANDOM 19.629
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.37 -0.37 0.73
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.432 r_dihedral_angle_4_deg 18.299 r_dihedral_angle_3_deg 15.502 r_dihedral_angle_1_deg 6.378 r_scangle_it 3.119 r_scbond_it 2.06 r_angle_refined_deg 1.509 r_mcangle_it 1.242 r_mcbond_it 0.767 r_nbtor_refined 0.299
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.432 r_dihedral_angle_4_deg 18.299 r_dihedral_angle_3_deg 15.502 r_dihedral_angle_1_deg 6.378 r_scangle_it 3.119 r_scbond_it 2.06 r_angle_refined_deg 1.509 r_mcangle_it 1.242 r_mcbond_it 0.767 r_nbtor_refined 0.299 r_symmetry_hbond_refined 0.234 r_nbd_refined 0.206 r_symmetry_vdw_refined 0.199 r_xyhbond_nbd_refined 0.158 r_chiral_restr 0.096 r_bond_refined_d 0.015 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4976 Nucleic Acid Atoms Solvent Atoms 264 Heterogen Atoms 55
Software Software Software Name Purpose PHASER phasing REFMAC refinement XDS data reduction XDS data scaling