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B-Raf Kinase Domain in Complex with an Aminopyridimine-based Inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293 12% PEG 8000, 400 mM Ammonium sulfate, 100 mM MES/Malic Acid/ Tris, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.89 57.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.499 α = 90 b = 100.499 β = 90 c = 161.305 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2009-01-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL7-1 0.979 SSRL BL7-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.5 30 98.4 0.119 5.8 3.8 10843 10670
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.5 3.69 99.7 0.26 2.8 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3.5 29.57 10843 10158 511 0.21519 0.2124 0.1982 0.26997 0.2607 RANDOM 28.266
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.07 0.07 -0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.734 r_dihedral_angle_3_deg 21.601 r_dihedral_angle_4_deg 19.257 r_dihedral_angle_1_deg 7.431 r_scangle_it 1.741 r_angle_refined_deg 1.531 r_mcangle_it 1.146 r_scbond_it 0.988 r_mcbond_it 0.638 r_nbtor_refined 0.322
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.734 r_dihedral_angle_3_deg 21.601 r_dihedral_angle_4_deg 19.257 r_dihedral_angle_1_deg 7.431 r_scangle_it 1.741 r_angle_refined_deg 1.531 r_mcangle_it 1.146 r_scbond_it 0.988 r_mcbond_it 0.638 r_nbtor_refined 0.322 r_nbd_refined 0.248 r_symmetry_vdw_refined 0.215 r_xyhbond_nbd_refined 0.185 r_symmetry_hbond_refined 0.132 r_chiral_restr 0.104 r_bond_refined_d 0.012 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4175 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 58
Software Software Software Name Purpose Blu-Ice data collection REFMAC refinement MOSFLM data reduction SCALA data scaling REFMAC phasing