☰ Navigation Tabs
B-Raf Kinase Domain in Complex with an Aminothienopyrimidine-based Inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 293 PEG 8000, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.18 61.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 108.196 α = 90 b = 108.196 β = 90 c = 153.103 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2010-01-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL7-1 0.979 SSRL BL7-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.3 30 98.9 0.094 7 5.4 14198 14042
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.3 3.48 99.9 0.353 2.1 5.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3.3 29.46 14198 13326 698 100 0.22838 0.22838 0.22499 0.213 0.29572 0.2869 RANDOM 61.897
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.47 -1.47 2.93
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.856 r_dihedral_angle_3_deg 21.826 r_dihedral_angle_4_deg 18.559 r_dihedral_angle_1_deg 7.089 r_scangle_it 1.631 r_angle_refined_deg 1.438 r_mcangle_it 1.195 r_scbond_it 0.966 r_mcbond_it 0.665 r_nbtor_refined 0.315
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.856 r_dihedral_angle_3_deg 21.826 r_dihedral_angle_4_deg 18.559 r_dihedral_angle_1_deg 7.089 r_scangle_it 1.631 r_angle_refined_deg 1.438 r_mcangle_it 1.195 r_scbond_it 0.966 r_mcbond_it 0.665 r_nbtor_refined 0.315 r_symmetry_hbond_refined 0.241 r_nbd_refined 0.231 r_symmetry_vdw_refined 0.214 r_xyhbond_nbd_refined 0.164 r_chiral_restr 0.102 r_bond_refined_d 0.011 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4336 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 56
Software Software Software Name Purpose Blu-Ice data collection REFMAC refinement MOSFLM data reduction SCALA data scaling REFMAC phasing