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Structure of Focal Adhesion Kinase catalytic domain in complex with novel allosteric inhibitor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MP8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 20% PEG4000, 8% 2-Propanol, 12% Glycerol, 0.1M HEPES, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.95 36.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.222 α = 90 b = 47.954 β = 112.45 c = 83.281 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC QUANTUM 315 2008-05-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.3 0.99 ALS 5.0.3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.67 50 89.1 0.042 26 3.7 53368 31536
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.67 1.71 51.5 0.193 5 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1MP8 1.67 39.31 53368 26668 1415 88.97 0.18974 0.1874 0.1865 0.23563 0.2339 RANDOM 35.367
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.23 -0.12 0.24 -0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.149 r_dihedral_angle_4_deg 21.686 r_dihedral_angle_3_deg 12.693 r_dihedral_angle_1_deg 5.333 r_scangle_it 2.636 r_mcangle_it 2.328 r_scbond_it 1.855 r_mcbond_it 1.752 r_angle_refined_deg 1.191 r_mcbond_other 0.434
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.149 r_dihedral_angle_4_deg 21.686 r_dihedral_angle_3_deg 12.693 r_dihedral_angle_1_deg 5.333 r_scangle_it 2.636 r_mcangle_it 2.328 r_scbond_it 1.855 r_mcbond_it 1.752 r_angle_refined_deg 1.191 r_mcbond_other 0.434 r_symmetry_hbond_refined 0.242 r_symmetry_vdw_other 0.233 r_nbd_refined 0.216 r_xyhbond_nbd_refined 0.185 r_nbtor_refined 0.179 r_nbd_other 0.178 r_symmetry_vdw_refined 0.12 r_chiral_restr 0.083 r_nbtor_other 0.079 r_bond_refined_d 0.009 r_gen_planes_refined 0.006 r_gen_planes_other 0.001 r_bond_other_d r_angle_other_deg r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2103 Nucleic Acid Atoms Solvent Atoms 243 Heterogen Atoms 32
Software Software Software Name Purpose HKL-2000 data collection MOLREP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling