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Crystal structure of the N-terminal domain of the secretin XcpQ from Pseudomonas aeruginosa
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 8.5 293.15 0.2M MgCl2, 0.1M Tris pH 8.5, 25% PEG3350, EVAPORATION, temperature 293.15K
Crystal Properties Matthews coefficient Solvent content 2.06 40.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 119.5 α = 90 b = 39.72 β = 99.84 c = 93.3 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.9193 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.03 39.67 28407 2 2 32.42
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.03 45.96 28407 27839 1382 98.29 0.2123 0.2104 0.2489 0.2584 RANDOM 36.22
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.6839 1.304 -1.6624 -1.0215
RMS Deviations Key Refinement Restraint Deviation f_other_torsion 14.51 f_omega_torsion 3.58 f_angle_deg 1.16 f_bond_d 0.01 f_dihedral_angle_d f_incorr_chiral_ct f_pseud_angle f_trig_c_planes f_gen_planes f_it
RMS Deviations Key Refinement Restraint Deviation f_other_torsion 14.51 f_omega_torsion 3.58 f_angle_deg 1.16 f_bond_d 0.01 f_dihedral_angle_d f_incorr_chiral_ct f_pseud_angle f_trig_c_planes f_gen_planes f_it f_nbd f_improper_torsion f_chiral_improper_torsion f_sum_occupancies f_utility_distance f_utility_angle f_utility_torsion f_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3100 Nucleic Acid Atoms Solvent Atoms 203 Heterogen Atoms 1
Software Software Software Name Purpose Proxima data collection PHASER phasing PHENIX refinement XDS data reduction autoPROC data scaling XSCALE data scaling