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Exploration of Pipecolate Sulfonamides as Binders of the FK506-Binding Proteins 51 and 52: Complex of FKBP51 with 2-(3-((R)-1-((S)-1-(3,5-dichlorophenylsulfonyl)piperidine-2-carbonyloxy)-3-(3,4-dimethoxy -phenyl)propyl)phenoxy)acetic acid
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3O5Q PDB ENTRY 3O5Q
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.5 293 37.5 % PEG3350, 0.1 M NH4OAc, 0.1 M HEPES pH 7.5, 10 % DMSO, vapor diffusion, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.31 46.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.966 α = 90 b = 54.641 β = 90 c = 56.596 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2010-02-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 0.9116 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1 41.966 99.5 0.033 18.4 3.8 70138 70138
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1 1.06 99 0.285 0.285 2.8 3.6 10049
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION isomorphous apo data THROUGHOUT PDB ENTRY 3O5Q 1 20 66559 66559 3503 100 0.1381 0.1381 0.1375 0.1461 0.1508 0.1588 RANDOM 10.936
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.154 r_dihedral_angle_4_deg 11.998 r_dihedral_angle_3_deg 10.781 r_dihedral_angle_1_deg 7.007 r_sphericity_free 6.85 r_scangle_it 3.853 r_sphericity_bonded 3.563 r_scbond_it 3.047 r_mcangle_it 2.199 r_angle_refined_deg 1.724
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.154 r_dihedral_angle_4_deg 11.998 r_dihedral_angle_3_deg 10.781 r_dihedral_angle_1_deg 7.007 r_sphericity_free 6.85 r_scangle_it 3.853 r_sphericity_bonded 3.563 r_scbond_it 3.047 r_mcangle_it 2.199 r_angle_refined_deg 1.724 r_mcbond_it 1.636 r_rigid_bond_restr 1.281 r_angle_other_deg 0.872 r_mcbond_other 0.682 r_chiral_restr 0.387 r_symmetry_hbond_refined 0.302 r_symmetry_vdw_other 0.253 r_nbd_refined 0.245 r_xyhbond_nbd_refined 0.243 r_nbd_other 0.206 r_nbtor_refined 0.179 r_symmetry_vdw_refined 0.127 r_nbtor_other 0.086 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d 0.003 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 982 Nucleic Acid Atoms Solvent Atoms 199 Heterogen Atoms 35
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction DENZO data reduction SCALEPACK data scaling