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Crystal structure of c-Met in complex with triazolopyridinone inhibitor 24
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.8 293 15% PEG 4000, 0.1 M HEPES, 6% isopropanol, 3% ethanol, 40 mM beta-mercaptoethanol, pH 7.8, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2 38.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.788 α = 90 b = 42.592 β = 90 c = 158.2 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ varimax optics 2010-04-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E SUPERBRIGHT 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 50 78.6 0.08 10.7 3.6 18565 14592 -3 30.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.05 2.12 43.2 0.5 3 788
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION Difference Fourier THROUGHOUT 2.05 39.56 18496 14549 739 78.66 0.2241 0.2208 0.2172 0.2887 0.2785 RANDOM 39.1061
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.04 0.24 -0.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.307 r_dihedral_angle_3_deg 13.684 r_dihedral_angle_4_deg 11.013 r_dihedral_angle_1_deg 4.912 r_scangle_it 1.447 r_mcangle_it 1.175 r_angle_refined_deg 1.03 r_scbond_it 0.924 r_mcbond_it 0.642 r_chiral_restr 0.068
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.307 r_dihedral_angle_3_deg 13.684 r_dihedral_angle_4_deg 11.013 r_dihedral_angle_1_deg 4.912 r_scangle_it 1.447 r_mcangle_it 1.175 r_angle_refined_deg 1.03 r_scbond_it 0.924 r_mcbond_it 0.642 r_chiral_restr 0.068 r_bond_refined_d 0.007 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2286 Nucleic Acid Atoms Solvent Atoms 167 Heterogen Atoms 33
Software Software Software Name Purpose SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction CrystalClear data collection DENZO data reduction