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The structure of Escherichia coli SfsA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 290 0.1 M sodium cacodylate pH 6.5, 0.8 M tri-sodium citrate, 1 % PEG 6000, 0.01 M Tris-HCl and 0.1 M magnesium acetate, VAPOR DIFFUSION, HANGING DROP, temperature 290K
Crystal Properties Matthews coefficient Solvent content 5.12 75.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 117.728 α = 90 b = 117.728 β = 90 c = 77.594 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2008-12-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.97564076 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 83.3 99.9 0.065 7.6 28289 28289
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.32 99.6 0.51 6.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.2 83.33 28289 26795 1443 100 0.20615 0.20482 0.2064 0.23079 0.2298 RANDOM 41.445
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.16 -0.16 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.589 r_dihedral_angle_3_deg 14.596 r_dihedral_angle_4_deg 7.263 r_dihedral_angle_1_deg 6.221 r_scangle_it 3.271 r_scbond_it 1.858 r_mcangle_it 1.241 r_angle_refined_deg 1.202 r_mcbond_it 0.645 r_chiral_restr 0.076
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.589 r_dihedral_angle_3_deg 14.596 r_dihedral_angle_4_deg 7.263 r_dihedral_angle_1_deg 6.221 r_scangle_it 3.271 r_scbond_it 1.858 r_mcangle_it 1.241 r_angle_refined_deg 1.202 r_mcbond_it 0.645 r_chiral_restr 0.076 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1821 Nucleic Acid Atoms Solvent Atoms 157 Heterogen Atoms 1
Software Software Software Name Purpose GDA data collection SOLVE phasing REFMAC refinement MOSFLM data reduction SCALA data scaling