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The structure of Pyrococcus Furiosus SfsA in complex with Ca2+
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 4.6 290 30% (w/v) PEG 3350, 0.2 M calcium acetate, 0.01 M sodium acetate and 0.22 M potassium chloride pH 4.6, vapor diffusion, temperature 290K
Crystal Properties Matthews coefficient Solvent content 2.27 45.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.017 α = 90 b = 46.017 β = 90 c = 194.575 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2008-12-16 M SINGLE WAVELENGTH 2 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2008-05-11 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.975564 Diamond I03 2 SYNCHROTRON ESRF BEAMLINE ID29 0.9793, 0.9795, 0.9755 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 64.8 100 0.08 6.1 42809 42809
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 100 0.45 6.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.8 196.19 42809 42741 2120 99.83 0.14 0.1379 0.1361 0.1356 0.1716 0.171 RANDOM 25.0569
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.84 -0.84 1.68
RMS Deviations Key Refinement Restraint Deviation r_scbond_it 34.058 r_dihedral_angle_2_deg 28.636 r_scangle_it 27.46 r_dihedral_angle_4_deg 19.063 r_dihedral_angle_3_deg 12.948 r_mcangle_it 8.954 r_mcbond_it 8.61 r_dihedral_angle_1_deg 6.078 r_angle_refined_deg 1.374 r_chiral_restr 0.094
RMS Deviations Key Refinement Restraint Deviation r_scbond_it 34.058 r_dihedral_angle_2_deg 28.636 r_scangle_it 27.46 r_dihedral_angle_4_deg 19.063 r_dihedral_angle_3_deg 12.948 r_mcangle_it 8.954 r_mcbond_it 8.61 r_dihedral_angle_1_deg 6.078 r_angle_refined_deg 1.374 r_chiral_restr 0.094 r_bond_refined_d 0.012 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3676 Nucleic Acid Atoms Solvent Atoms 164 Heterogen Atoms 4
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SOLVE phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction GDA data collection