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The structure of the catalytic domain of NcLPMO9C from the filamentous fungus Neurospora crassa
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other SAME PROTEIN WITH ONE METAL INSTEAD OF 3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 0.2M ZINC ACETATE, 17.5% PEG3350, pH 8
Crystal Properties Matthews coefficient Solvent content 1.93 36.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.308 α = 90 b = 67.528 β = 100.91 c = 65.592 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD MIRRORS 2013-12-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-3 MAX II I911-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 64.41 99.3 0.31 6.8 6.7 29831 2 7.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.94 98.4 1.27 2 6.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT SAME PROTEIN WITH ONE METAL INSTEAD OF 3 1.9 64.406 29810 1510 99.135 0.215 0.2122 0.2201 0.2672 0.2722 RANDOM 9.993
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.727 0.116 2.533 -0.792
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.073 r_dihedral_angle_3_deg 13.427 r_dihedral_angle_1_deg 6.869 r_dihedral_angle_4_deg 6.193 r_angle_refined_deg 1.447 r_mcangle_it 1.249 r_scangle_it 1.176 r_angle_other_deg 0.806 r_scbond_it 0.754 r_mcbond_it 0.702
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.073 r_dihedral_angle_3_deg 13.427 r_dihedral_angle_1_deg 6.869 r_dihedral_angle_4_deg 6.193 r_angle_refined_deg 1.447 r_mcangle_it 1.249 r_scangle_it 1.176 r_angle_other_deg 0.806 r_scbond_it 0.754 r_mcbond_it 0.702 r_mcbond_other 0.699 r_nbd_refined 0.27 r_nbd_other 0.222 r_nbtor_refined 0.176 r_xyhbond_nbd_refined 0.152 r_chiral_restr 0.082 r_metal_ion_refined 0.028 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3259 Nucleic Acid Atoms Solvent Atoms 423 Heterogen Atoms 50
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing