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Crystal structure of S. aureus FabI in complex with NADP and 5-bromo- 2-(4-chloro-2-hydroxyphenoxy)benzonitrile
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4ALK PDB ENTRY 4ALK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 0.1 M NA/K-PHOSPHATE PH 6.5, 47% MPD
Crystal Properties Matthews coefficient Solvent content 2.96 58.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.077 α = 98.43 b = 95.168 β = 97.53 c = 95.2 γ = 111.47
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2013-04-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 46.58 98.2 0.1 8.3 3.6 152227 6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.15 2.27 97.6 0.56 2.2 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4ALK 2.15 46.58 144551 7676 98.18 0.17684 0.17417 0.193 0.22679 0.2406 RANDOM 36.78
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.6 0.16 -0.27 -1.68 -1.55 -2.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.071 r_dihedral_angle_3_deg 16.296 r_dihedral_angle_4_deg 15.73 r_dihedral_angle_1_deg 6.867 r_scangle_it 5.468 r_scbond_it 3.794 r_mcangle_it 2.074 r_angle_refined_deg 1.682 r_mcbond_it 1.323 r_chiral_restr 0.091
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.071 r_dihedral_angle_3_deg 16.296 r_dihedral_angle_4_deg 15.73 r_dihedral_angle_1_deg 6.867 r_scangle_it 5.468 r_scbond_it 3.794 r_mcangle_it 2.074 r_angle_refined_deg 1.682 r_mcbond_it 1.323 r_chiral_restr 0.091 r_gen_planes_refined 0.013 r_bond_refined_d 0.012 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15640 Nucleic Acid Atoms Solvent Atoms 1016 Heterogen Atoms 588
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing