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Monomeric pseudorabies virus protease pUL26N at 2.5 A resolution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other DIMERIC PRV PROTEASE, YET TO BE DEPOSITED
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 0.1 M TRIS PH 8, 14% PEG 20,000
Crystal Properties Matthews coefficient Solvent content 2.5 50.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.437 α = 90 b = 101.337 β = 90 c = 130.078 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M MIRRORS 2013-08-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.53 80 97.8 0.08 14.29 3.8 18230 -3 55.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.53 2.68 93.6 0.66 2.06 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT DIMERIC PRV PROTEASE, YET TO BE DEPOSITED 2.53 79.94 17352 878 97.75 0.20078 0.19819 0.2067 0.25215 0.249 RANDOM 59.4
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.88 1.45 0.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.613 r_dihedral_angle_4_deg 18.892 r_dihedral_angle_3_deg 17.936 r_dihedral_angle_1_deg 7.436 r_mcangle_it 2.373 r_angle_refined_deg 1.788 r_scbond_it 1.451 r_mcbond_other 1.443 r_mcbond_it 1.442 r_angle_other_deg 0.877
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.613 r_dihedral_angle_4_deg 18.892 r_dihedral_angle_3_deg 17.936 r_dihedral_angle_1_deg 7.436 r_mcangle_it 2.373 r_angle_refined_deg 1.788 r_scbond_it 1.451 r_mcbond_other 1.443 r_mcbond_it 1.442 r_angle_other_deg 0.877 r_chiral_restr 0.086 r_bond_refined_d 0.014 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3123 Nucleic Acid Atoms Solvent Atoms 49 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing