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Structural insights into the N-terminus of the EHD2 ATPase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2QPT PDB ENTRY 2QPT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 100 MM MES PH 6.5, 20 MM MGCL2, 4% PEG3350, 5% MPD
Crystal Properties Matthews coefficient Solvent content 2.9 58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 99.851 α = 90 b = 134.653 β = 106.05 c = 56.068 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD MIRRORS 2010-11-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 41 95.9 0.05 10.5 1.63 26426 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.1 98 0.34 1.8 1.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2QPT 3 78.15 13424 699 98.73 0.23255 0.23019 0.2298 0.27917 0.2715 RANDOM 83.356
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.1 -0.41 -2.28 1.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.277 r_dihedral_angle_3_deg 14.12 r_dihedral_angle_4_deg 12.595 r_dihedral_angle_1_deg 5.373 r_mcangle_it 2.935 r_scbond_it 1.795 r_mcbond_it 1.674 r_mcbond_other 1.674 r_angle_refined_deg 1.027 r_angle_other_deg 0.718
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.277 r_dihedral_angle_3_deg 14.12 r_dihedral_angle_4_deg 12.595 r_dihedral_angle_1_deg 5.373 r_mcangle_it 2.935 r_scbond_it 1.795 r_mcbond_it 1.674 r_mcbond_other 1.674 r_angle_refined_deg 1.027 r_angle_other_deg 0.718 r_chiral_restr 0.053 r_bond_refined_d 0.005 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3956 Nucleic Acid Atoms Solvent Atoms 4 Heterogen Atoms 33
Software Software Software Name Purpose XDS data reduction XDS data scaling SHARP phasing REFMAC phasing REFMAC refinement