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(R)-selective amine transaminase from Aspergillus fumigatus at 1.27 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 20 MM TRICINE PH 7.5, 0.01 MM PLP
Crystal Properties Matthews coefficient Solvent content 2.9 58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 102.367 α = 90 b = 120.935 β = 90 c = 135.464 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M MIRROR 2013-08-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.91841,1.7712 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.27 50 99.1 0.06 13.2 3.38 426722 2 17.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.27 1.35 97.9 0.6 2 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 1.27 47.88 208810 10991 99.7 0.10447 0.10329 0.1029 0.12697 0.1266 RANDOM 16.118
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.51 -0.24 -0.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.317 r_dihedral_angle_4_deg 18.432 r_dihedral_angle_3_deg 12.792 r_dihedral_angle_1_deg 5.78 r_scbond_it 5.606 r_rigid_bond_restr 3.485 r_mcangle_it 3.177 r_mcbond_it 2.825 r_mcbond_other 2.779 r_angle_refined_deg 1.842
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.317 r_dihedral_angle_4_deg 18.432 r_dihedral_angle_3_deg 12.792 r_dihedral_angle_1_deg 5.78 r_scbond_it 5.606 r_rigid_bond_restr 3.485 r_mcangle_it 3.177 r_mcbond_it 2.825 r_mcbond_other 2.779 r_angle_refined_deg 1.842 r_angle_other_deg 1.195 r_chiral_restr 0.136 r_bond_refined_d 0.014 r_gen_planes_refined 0.012 r_gen_planes_other 0.004 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5043 Nucleic Acid Atoms Solvent Atoms 1031 Heterogen Atoms 62
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling SHELXCDE phasing