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SAVINASE CRYSTAL STRUCTURES FOR COMBINED SINGLE CRYSTAL DIFFRACTION AND POWDER DIFFRACTION ANALYSIS
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1SVN PDB ENTRY 1SVN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 20 MG/ML PROTEIN, 4% PEG 4000, 0.33 M NACL, 1.5 MM CACL2, 18 MM CITRATE BUFFER PH 6.0
Crystal Properties Matthews coefficient Solvent content 2.06 40.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.23 α = 90 b = 61.82 β = 90 c = 75.25 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2013-08-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.17 23.88 78.2 0.42 39.8 5.8 58833
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1SVN 1.17 23.88 55788 2977 78.4 0.09368 0.09238 0.1114 0.11886 0.1338 RANDOM 11.674
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.37 -0.05 -0.32
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 62.288 r_dihedral_angle_2_deg 38.722 r_dihedral_angle_4_deg 19.161 r_sphericity_bonded 14.228 r_dihedral_angle_3_deg 11.258 r_rigid_bond_restr 6.746 r_dihedral_angle_1_deg 5.848 r_scbond_it 2.25 r_angle_refined_deg 1.882 r_mcangle_it 1.338
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 62.288 r_dihedral_angle_2_deg 38.722 r_dihedral_angle_4_deg 19.161 r_sphericity_bonded 14.228 r_dihedral_angle_3_deg 11.258 r_rigid_bond_restr 6.746 r_dihedral_angle_1_deg 5.848 r_scbond_it 2.25 r_angle_refined_deg 1.882 r_mcangle_it 1.338 r_angle_other_deg 1.199 r_mcbond_it 1.089 r_mcbond_other 1.071 r_chiral_restr 0.127 r_bond_refined_d 0.021 r_gen_planes_refined 0.01 r_gen_planes_other 0.004 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1879 Nucleic Acid Atoms Solvent Atoms 362 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement xia2 data scaling MOLREP phasing