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Structure of Respiratory Syncytial Virus F protein head domain
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3RRR PDB ENTRY 3RRR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 25% PEG 8000, 200 MM AMMONIUM SULFATE, 200 MM SODIUM CACODYLATE PH 6.5
Crystal Properties Matthews coefficient Solvent content 3.05 59.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.38 α = 90 b = 133.501 β = 93.32 c = 116.42 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2003-06-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF ESRF
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.65 43.1 88 0.11 6.2 1.7 53253 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.65 2.79 85.4 0.67 1.5 1.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3RRR 2.65 43.07 50404 2763 87.66 0.21629 0.21456 0.2153 0.24718 0.2467 RANDOM 40.065
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.57 -0.6 1.14 0.47
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.236 r_dihedral_angle_3_deg 15.616 r_dihedral_angle_4_deg 13.775 r_dihedral_angle_1_deg 5.416 r_mcangle_it 4.906 r_scbond_it 3.444 r_mcbond_it 3.017 r_mcbond_other 3.014 r_angle_refined_deg 1.447 r_angle_other_deg 1.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.236 r_dihedral_angle_3_deg 15.616 r_dihedral_angle_4_deg 13.775 r_dihedral_angle_1_deg 5.416 r_mcangle_it 4.906 r_scbond_it 3.444 r_mcbond_it 3.017 r_mcbond_other 3.014 r_angle_refined_deg 1.447 r_angle_other_deg 1.13 r_chiral_restr 0.075 r_bond_refined_d 0.011 r_bond_other_d 0.007 r_gen_planes_refined 0.007 r_gen_planes_other 0.006 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12142 Nucleic Acid Atoms Solvent Atoms 36 Heterogen Atoms 15
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing