X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
16.50.1 M BISTRIS PH 6.5, 22% PEG MME 5000
Crystal Properties
Matthews coefficientSolvent content
2.1743.26

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 104.41α = 90
b = 104.41β = 90
c = 88.44γ = 120
Symmetry
Space GroupP 32

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCDMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I04DiamondI04

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.0390.4299.80.168.55.3208822
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.033.1199.80.682.55.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3.0390.421979310701000.214520.211390.27335RANDOM32.7
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.950.981.95-2.93
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.75
r_dihedral_angle_3_deg13.742
r_dihedral_angle_4_deg12.392
r_dihedral_angle_1_deg5.076
r_angle_other_deg4.475
r_angle_refined_deg1.183
r_scangle_it0.489
r_mcangle_it0.355
r_scbond_it0.311
r_chiral_restr0.26
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.75
r_dihedral_angle_3_deg13.742
r_dihedral_angle_4_deg12.392
r_dihedral_angle_1_deg5.076
r_angle_other_deg4.475
r_angle_refined_deg1.183
r_scangle_it0.489
r_mcangle_it0.355
r_scbond_it0.311
r_chiral_restr0.26
r_mcbond_it0.192
r_gen_planes_other0.031
r_bond_refined_d0.012
r_gen_planes_refined0.007
r_bond_other_d
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7899
Nucleic Acid Atoms
Solvent Atoms10
Heterogen Atoms84

Software

Software
Software NamePurpose
REFMACrefinement
PHASERphasing