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Structural characterization using Sulfur-SAD of the cytoplasmic domain of Burkholderia pseudomallei PilO2Bp, an actin-like protein component of a Type IVb R64-derivative pilus machinery.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.8 1.3 M SODIUM POTASSIUM PHOSPHATE PH 7.8
Crystal Properties Matthews coefficient Solvent content 2.13 42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.042 α = 90 b = 56.042 β = 90 c = 117 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD MIRRORS 2013-03-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 50 99.9 0.06 35.9 10.3 27940 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.93 100 0.68 2.95 10.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 1.55 32.03 26448 1438 99.96 0.15209 0.14961 0.19844 0.1986 RANDOM 19.641
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.54 -0.54 1.09
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 31.119 r_dihedral_angle_2_deg 30.762 r_dihedral_angle_4_deg 16.387 r_dihedral_angle_3_deg 14.219 r_sphericity_bonded 11.143 r_dihedral_angle_1_deg 5.76 r_rigid_bond_restr 2.831 r_angle_refined_deg 1.372 r_angle_other_deg 0.762 r_chiral_restr 0.076
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 31.119 r_dihedral_angle_2_deg 30.762 r_dihedral_angle_4_deg 16.387 r_dihedral_angle_3_deg 14.219 r_sphericity_bonded 11.143 r_dihedral_angle_1_deg 5.76 r_rigid_bond_restr 2.831 r_angle_refined_deg 1.372 r_angle_other_deg 0.762 r_chiral_restr 0.076 r_bond_refined_d 0.006 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1560 Nucleic Acid Atoms Solvent Atoms 189 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling