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SIR2 COMPLEX STRUCTURE MIXTURE OF EX-527 INHIBITOR AND REACTION PRODUCTS OR OF REACTION SUBSTRATES P53 PEPTIDE AND NAD
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2H4F PDB ENTRY 2H4F
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 8.5
Crystal Properties Matthews coefficient Solvent content 2.66 53.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.75 α = 90 b = 59.92 β = 90 c = 109.03 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD COLLIMATOR 2011-09-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 25 99.8 0.06 20.7 4.4 24822 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 100 0.47 3.5 4.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2H4F 1.9 40.32 23580 1241 99.84 0.16104 0.1593 0.19357 0.1894 RANDOM 26.528
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.99 -0.16 -0.83
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.253 r_dihedral_angle_4_deg 19.676 r_dihedral_angle_3_deg 14.022 r_dihedral_angle_1_deg 6.187 r_mcangle_it 3.258 r_scbond_it 2.829 r_mcbond_it 2.122 r_mcbond_other 2.115 r_angle_refined_deg 2.065 r_angle_other_deg 1.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.253 r_dihedral_angle_4_deg 19.676 r_dihedral_angle_3_deg 14.022 r_dihedral_angle_1_deg 6.187 r_mcangle_it 3.258 r_scbond_it 2.829 r_mcbond_it 2.122 r_mcbond_other 2.115 r_angle_refined_deg 2.065 r_angle_other_deg 1.01 r_chiral_restr 0.118 r_bond_refined_d 0.02 r_gen_planes_refined 0.01 r_bond_other_d 0.003 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1928 Nucleic Acid Atoms Solvent Atoms 200 Heterogen Atoms 105
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing