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Legionella pneumophila NTPDase1 crystal form II (closed) in complex with MG GMPPNP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 100MM NAMES PH 5.5, 15% PEG3350, 10% PEG200
Crystal Properties Matthews coefficient Solvent content 2.2 44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.186 α = 90 b = 86.166 β = 107.02 c = 71.878 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 29 99.3 0.05 11 4 127181 -3 15.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.45 28.99 125859 1288 99.25 0.1242 0.12371 0.1206 0.17444 0.171 RANDOM 21.419
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.04 -0.18 -0.03 0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.985 r_sphericity_free 37.78 r_dihedral_angle_4_deg 21.649 r_sphericity_bonded 18.96 r_dihedral_angle_3_deg 12.588 r_dihedral_angle_1_deg 6.008 r_rigid_bond_restr 5.836 r_angle_refined_deg 1.901 r_chiral_restr 0.124 r_bond_refined_d 0.019
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.985 r_sphericity_free 37.78 r_dihedral_angle_4_deg 21.649 r_sphericity_bonded 18.96 r_dihedral_angle_3_deg 12.588 r_dihedral_angle_1_deg 6.008 r_rigid_bond_restr 5.836 r_angle_refined_deg 1.901 r_chiral_restr 0.124 r_bond_refined_d 0.019 r_gen_planes_refined 0.011 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5746 Nucleic Acid Atoms Solvent Atoms 662 Heterogen Atoms 93
Software Software Software Name Purpose REFMAC refinement