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Legionella pneumophila NTPDase1 crystal form II, closed, Mg AMPNP complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.4 100MM NAMES PH 5.4, 15% PEG3350
Crystal Properties Matthews coefficient Solvent content 2.2 43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.07 α = 90 b = 84.756 β = 106.48 c = 70.837 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 29 99.1 0.07 7.3 3.4 173270 -3 9.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 1.3 28.48 171514 1728 98.96 0.13638 0.1359 0.134 0.18559 0.1837 RANDOM 17.702
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.09 1.31 -0.78 0.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.397 r_sphericity_free 33.015 r_sphericity_bonded 16.557 r_dihedral_angle_3_deg 12.912 r_dihedral_angle_4_deg 6.635 r_rigid_bond_restr 6.526 r_dihedral_angle_1_deg 5.978 r_angle_refined_deg 2.044 r_chiral_restr 0.136 r_bond_refined_d 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.397 r_sphericity_free 33.015 r_sphericity_bonded 16.557 r_dihedral_angle_3_deg 12.912 r_dihedral_angle_4_deg 6.635 r_rigid_bond_restr 6.526 r_dihedral_angle_1_deg 5.978 r_angle_refined_deg 2.044 r_chiral_restr 0.136 r_bond_refined_d 0.02 r_gen_planes_refined 0.014 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5737 Nucleic Acid Atoms Solvent Atoms 784 Heterogen Atoms 83
Software Software Software Name Purpose REFMAC refinement