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Galectin-3c in complex with Bisamido-thiogalactoside derivate 3
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3ZSL PDB ENTRY 3ZSL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 19 MG/ML GALECTIN-3C, 100MM NACL, 29 % W/V PEG 4000, 0.4 M NASCN, 18 MM BETA-MERCAPTOETHANOL,0.02 % NAN3, 10 MM PHOSHATE, 100 MM MGCL2, 100 MM TRIS/HCL PH 7.5, 2.5 MM LIGAND
Crystal Properties Matthews coefficient Solvent content 1.73 29.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.84 α = 90 b = 58.24 β = 90 c = 62.75 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH MULTILAYER MIRRORS 2011-09-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-2 MAX II I911-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 0.96 30 98 0.03 20.9 5.2 79320 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 0.96 0.98 92.3 0.56 2 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3ZSL 0.96 20 75348 3965 93.1 0.128 0.125 0.1389 0.178 0.1584 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 77 1143 1463.5
RMS Deviations Key Refinement Restraint Deviation s_approx_iso_adps 0.105 s_zero_chiral_vol 0.057 s_non_zero_chiral_vol 0.053 s_from_restr_planes 0.0351 s_similar_adp_cmpnt 0.034 s_angle_d 0.023 s_anti_bump_dis_restr 0.017 s_bond_d 0.006 s_rigid_bond_adp_cmpnt 0.002 s_similar_dist
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1106 Nucleic Acid Atoms Solvent Atoms 317 Heterogen Atoms 55
Software Software Software Name Purpose SHELXL-97 refinement XDS data reduction XSCALE data scaling